1.
PARSEC: PAtteRn SEarch and Contextualization.
Allot A, Anno YN, Poidevin L, Ripp R, Poch O, Lecompte O.
Bioinformatics. 2013 Oct 15;29(20):2643-4. doi: 10.1093/bioinformatics/btt455. Epub 2013 Aug 7.
2.
Seven new loci associated with age-related macular degeneration.
Fritsche LG, Chen W, Schu M, Yaspan BL, Yu Y, Thorleifsson G, Zack DJ, Arakawa S, Cipriani V, Ripke S, Igo RP Jr, Buitendijk GH, Sim X, Weeks DE, Guymer RH, Merriam JE, Francis PJ, Hannum G, Agarwal A, Armbrecht AM, Audo I, Aung T, Barile GR, Benchaboune M, Bird AC, Bishop PN, Branham KE, Brooks M, Brucker AJ, Cade WH, Cain MS, Campochiaro PA, Chan CC, Cheng CY, Chew EY, Chin KA, Chowers I, Clayton DG, Cojocaru R, Conley YP, Cornes BK, Daly MJ, Dhillon B, Edwards AO, Evangelou E, Fagerness J, Ferreyra HA, Friedman JS, Geirsdottir A, George RJ, Gieger C, Gupta N, Hagstrom SA, Harding SP, Haritoglou C, Heckenlively JR, Holz FG, Hughes G, Ioannidis JP, Ishibashi T, Joseph P, Jun G, Kamatani Y, Katsanis N, N Keilhauer C, Khan JC, Kim IK, Kiyohara Y, Klein BE, Klein R, Kovach JL, Kozak I, Lee CJ, Lee KE, Lichtner P, Lotery AJ, Meitinger T, Mitchell P, Mohand-Saïd S, Moore AT, Morgan DJ, Morrison MA, Myers CE, Naj AC, Nakamura Y, Okada Y, Orlin A, Ortube MC, Othman MI, Pappas C, Park KH, Pauer GJ, Peachey NS, Poch O, Priya RR, Reynolds R, Richardson AJ, Ripp R, Rudolph G, Ryu E, Sahel JA, Schaumberg DA, Scholl HP, Schwartz SG, Scott WK, Shahid H, Sigurdsson H, Silvestri G, Sivakumaran TA, Smith RT, Sobrin L, Souied EH, Stambolian DE, Stefansson H, Sturgill-Short GM, Takahashi A, Tosakulwong N, Truitt BJ, Tsironi EE, Uitterlinden AG, van Duijn CM, Vijaya L, Vingerling JR, Vithana EN, Webster AR, Wichmann HE, Winkler TW, Wong TY, Wright AF, Zelenika D, Zhang M, Zhao L, Zhang K, Klein ML, Hageman GS, Lathrop GM, Stefansson K, Allikmets R, Baird PN, Gorin MB, Wang JJ, Klaver CC, Seddon JM, Pericak-Vance MA, Iyengar SK, Yates JR, Swaroop A, Weber BH, Kubo M, Deangelis MM, Léveillard T, Thorsteinsdottir U, Haines JL, Farrer LA, Heid IM, Abecasis GR; AMD Gene Consortium.
Nat Genet. 2013 Apr;45(4):433-9, 439e1-2. doi: 10.1038/ng.2578. Epub 2013 Mar 3.
3.
Functional insights into the core-TFIIH from a comparative survey.
Bedez F, Linard B, Brochet X, Ripp R, Thompson JD, Moras D, Lecompte O, Poch O.
Genomics. 2013 Mar;101(3):178-86. doi: 10.1016/j.ygeno.2012.11.003. Epub 2012 Nov 10.
4.
De Craene JO, Ripp R, Lecompte O, Thompson JD, Poch O, Friant S.
BMC Genomics. 2012 Jul 2;13:297. doi: 10.1186/1471-2164-13-297.
5.
KD4v: Comprehensible Knowledge Discovery System for Missense Variant.
Luu TD, Rusu A, Walter V, Linard B, Poidevin L, Ripp R, Moulinier L, Muller J, Raffelsberger W, Wicker N, Lecompte O, Thompson JD, Poch O, Nguyen H.
Nucleic Acids Res. 2012 Jul;40(Web Server issue):W71-5. doi: 10.1093/nar/gks474. Epub 2012 May 27.
6.
MSV3d: database of human MisSense Variants mapped to 3D protein structure.
Luu TD, Rusu AM, Walter V, Ripp R, Moulinier L, Muller J, Toursel T, Thompson JD, Poch O, Nguyen H.
Database (Oxford). 2012 Apr 3;2012:bas018. doi: 10.1093/database/bas018. Print 2012.
7.
Delyfer MN, Raffelsberger W, Mercier D, Korobelnik JF, Gaudric A, Charteris DG, Tadayoni R, Metge F, Caputo G, Barale PO, Ripp R, Muller JD, Poch O, Sahel JA, Léveillard T.
PLoS One. 2011;6(12):e28791. doi: 10.1371/journal.pone.0028791. Epub 2011 Dec 9.
8.
Boutet I, Ripp R, Lecompte O, Dossat C, Corre E, Tanguy A, Lallier FH.
BMC Genomics. 2011 Oct 28;12:530. doi: 10.1186/1471-2164-12-530.
9.
The homeobox gene CHX10/VSX2 regulates RdCVF promoter activity in the inner retina.
Reichman S, Kalathur RK, Lambard S, Aït-Ali N, Yang Y, Lardenois A, Ripp R, Poch O, Zack DJ, Sahel JA, Léveillard T.
Hum Mol Genet. 2010 Jan 15;19(2):250-61. doi: 10.1093/hmg/ddp484. Epub 2009 Oct 20.
10.
RETINOBASE: a web database, data mining and analysis platform for gene expression data on retina.
Kalathur RK, Gagniere N, Berthommier G, Poidevin L, Raffelsberger W, Ripp R, Léveillard T, Poch O.
BMC Genomics. 2008 May 5;9:208. doi: 10.1186/1471-2164-9-208.
11.
Blast sampling for structural and functional analyses.
Friedrich A, Ripp R, Garnier N, Bettler E, Deléage G, Poch O, Moulinier L.
BMC Bioinformatics. 2007 Feb 23;8:62.
12.
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease.
Schlüter A, Fourcade S, Domènech-Estévez E, Gabaldón T, Huerta-Cepas J, Berthommier G, Ripp R, Wanders RJ, Poch O, Pujol A.
Nucleic Acids Res. 2007 Jan;35(Database issue):D815-22. Epub 2006 Nov 28.
13.
SPINE bioinformatics and data-management aspects of high-throughput structural biology.
Albeck S, Alzari P, Andreini C, Banci L, Berry IM, Bertini I, Cambillau C, Canard B, Carter L, Cohen SX, Diprose JM, Dym O, Esnouf RM, Felder C, Ferron F, Guillemot F, Hamer R, Ben Jelloul M, Laskowski RA, Laurent T, Longhi S, Lopez R, Luchinat C, Malet H, Mochel T, Morris RJ, Moulinier L, Oinn T, Pajon A, Peleg Y, Perrakis A, Poch O, Prilusky J, Rachedi A, Ripp R, Rosato A, Silman I, Stuart DI, Sussman JL, Thierry JC, Thompson JD, Thornton JM, Unger T, Vaughan B, Vranken W, Watson JD, Whamond G, Henrick K.
Acta Crystallogr D Biol Crystallogr. 2006 Oct;62(Pt 10):1184-95. Epub 2006 Sep 19. Review.
14.
The evolutionary origin of peroxisomes: an ER-peroxisome connection.
Schlüter A, Fourcade S, Ripp R, Mandel JL, Poch O, Pujol A.
Mol Biol Evol. 2006 Apr;23(4):838-45. Epub 2006 Feb 1.
15.
ICDS database: interrupted CoDing sequences in prokaryotic genomes.
Perrodou E, Deshayes C, Muller J, Schaeffer C, Van Dorsselaer A, Ripp R, Poch O, Reyrat JM, Lecompte O.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D338-43.
16.
Structural genomics of eukaryotic targets at a laboratory scale.
Busso D, Poussin-Courmontagne P, Rosé D, Ripp R, Litt A, Thierry JC, Moras D.
J Struct Funct Genomics. 2005;6(2-3):81-8.
17.
BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
Thompson JD, Koehl P, Ripp R, Poch O.
Proteins. 2005 Oct 1;61(1):127-36.
18.
PipeAlign: A new toolkit for protein family analysis.
Plewniak F, Bianchetti L, Brelivet Y, Carles A, Chalmel F, Lecompte O, Mochel T, Moulinier L, Muller A, Muller J, Prigent V, Ripp R, Thierry JC, Thompson JD, Wicker N, Poch O.
Nucleic Acids Res. 2003 Jul 1;31(13):3829-32.
19.
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi.
Cohen GN, Barbe V, Flament D, Galperin M, Heilig R, Lecompte O, Poch O, Prieur D, Quérellou J, Ripp R, Thierry JC, Van der Oost J, Weissenbach J, Zivanovic Y, Forterre P.
Mol Microbiol. 2003 Mar;47(6):1495-512.
20.
Lecompte O, Ripp R, Thierry JC, Moras D, Poch O.
Nucleic Acids Res. 2002 Dec 15;30(24):5382-90.
21.
Towards a reliable objective function for multiple sequence alignments.
Thompson JD, Plewniak F, Ripp R, Thierry JC, Poch O.
J Mol Biol. 2001 Dec 7;314(4):937-51.
22.
Lecompte O, Ripp R, Puzos-Barbe V, Duprat S, Heilig R, Dietrich J, Thierry JC, Poch O.
Genome Res. 2001 Jun;11(6):981-93.
23.
The structure of cyclin H: common mode of kinase activation and specific features.
Andersen G, Busso D, Poterszman A, Hwang JR, Wurtz JM, Ripp R, Thierry JC, Egly JM, Moras D.
EMBO J. 1997 Mar 3;16(5):958-67.